COL11A1
Kolagenski alfa-1(XI) lanac jest protein koji je kod ljudi kodiran genom COL11A1 sa hromosoma 1.[5][6]
Amiokiselininska sekvenca
urediDužina polipeptidnog lanca je 1.806 aminokiselina, a molekulska težina 181.065 Da.[7]
| 10 | 20 | 30 | 40 | 50 | ||||
|---|---|---|---|---|---|---|---|---|
| MEPWSSRWKT | KRWLWDFTVT | TLALTFLFQA | REVRGAAPVD | VLKALDFHNS | ||||
| PEGISKTTGF | CTNRKNSKGS | DTAYRVSKQA | QLSAPTKQLF | PGGTFPEDFS | ||||
| ILFTVKPKKG | IQSFLLSIYN | EHGIQQIGVE | VGRSPVFLFE | DHTGKPAPED | ||||
| YPLFRTVNIA | DGKWHRVAIS | VEKKTVTMIV | DCKKKTTKPL | DRSERAIVDT | ||||
| NGITVFGTRI | LDEEVFEGDI | QQFLITGDPK | AAYDYCEHYS | PDCDSSAPKA | ||||
| AQAQEPQIDE | YAPEDIIEYD | YEYGEAEYKE | AESVTEGPTV | TEETIAQTEA | ||||
| NIVDDFQEYN | YGTMESYQTE | APRHVSGTNE | PNPVEEIFTE | EYLTGEDYDS | ||||
| QRKNSEDTLY | ENKEIDGRDS | DLLVDGDLGE | YDFYEYKEYE | DKPTSPPNEE | ||||
| FGPGVPAETD | ITETSINGHG | AYGEKGQKGE | PAVVEPGMLV | EGPPGPAGPA | ||||
| GIMGPPGLQG | PTGPPGDPGD | RGPPGRPGLP | GADGLPGPPG | TMLMLPFRYG | ||||
| GDGSKGPTIS | AQEAQAQAIL | QQARIALRGP | PGPMGLTGRP | GPVGGPGSSG | ||||
| AKGESGDPGP | QGPRGVQGPP | GPTGKPGKRG | RPGADGGRGM | PGEPGAKGDR | ||||
| GFDGLPGLPG | DKGHRGERGP | QGPPGPPGDD | GMRGEDGEIG | PRGLPGEAGP | ||||
| RGLLGPRGTP | GAPGQPGMAG | VDGPPGPKGN | MGPQGEPGPP | GQQGNPGPQG | ||||
| LPGPQGPIGP | PGEKGPQGKP | GLAGLPGADG | PPGHPGKEGQ | SGEKGALGPP | ||||
| GPQGPIGYPG | PRGVKGADGV | RGLKGSKGEK | GEDGFPGFKG | DMGLKGDRGE | ||||
| VGQIGPRGED | GPEGPKGRAG | PTGDPGPSGQ | AGEKGKLGVP | GLPGYPGRQG | ||||
| PKGSTGFPGF | PGANGEKGAR | GVAGKPGPRG | QRGPTGPRGS | RGARGPTGKP | ||||
| GPKGTSGGDG | PPGPPGERGP | QGPQGPVGFP | GPKGPPGPPG | KDGLPGHPGQ | ||||
| RGETGFQGKT | GPPGPGGVVG | PQGPTGETGP | IGERGHPGPP | GPPGEQGLPG | ||||
| AAGKEGAKGD | PGPQGISGKD | GPAGLRGFPG | ERGLPGAQGA | PGLKGGEGPQ | ||||
| GPPGPVGSPG | ERGSAGTAGP | IGLPGRPGPQ | GPPGPAGEKG | APGEKGPQGP | ||||
| AGRDGVQGPV | GLPGPAGPAG | SPGEDGDKGE | IGEPGQKGSK | GDKGENGPPG | ||||
| PPGLQGPVGA | PGIAGGDGEP | GPRGQQGMFG | QKGDEGARGF | PGPPGPIGLQ | ||||
| GLPGPPGEKG | ENGDVGPMGP | PGPPGPRGPQ | GPNGADGPQG | PPGSVGSVGG | ||||
| VGEKGEPGEA | GNPGPPGEAG | VGGPKGERGE | KGEAGPPGAA | GPPGAKGPPG | ||||
| DDGPKGNPGP | VGFPGDPGPP | GEPGPAGQDG | VGGDKGEDGD | PGQPGPPGPS | ||||
| GEAGPPGPPG | KRGPPGAAGA | EGRQGEKGAK | GEAGAEGPPG | KTGPVGPQGP | ||||
| AGKPGPEGLR | GIPGPVGEQG | LPGAAGQDGP | PGPMGPPGLP | GLKGDPGSKG | ||||
| EKGHPGLIGL | IGPPGEQGEK | GDRGLPGTQG | SPGAKGDGGI | PGPAGPLGPP | ||||
| GPPGLPGPQG | PKGNKGSTGP | AGQKGDSGLP | GPPGSPGPPG | EVIQPLPILS | ||||
| SKKTRRHTEG | MQADADDNIL | DYSDGMEEIF | GSLNSLKQDI | EHMKFPMGTQ | ||||
| TNPARTCKDL | QLSHPDFPDG | EYWIDPNQGC | SGDSFKVYCN | FTSGGETCIY | ||||
| PDKKSEGVRI | SSWPKEKPGS | WFSEFKRGKL | LSYLDVEGNS | INMVQMTFLK | ||||
| LLTASARQNF | TYHCHQSAAW | YDVSSGSYDK | ALRFLGSNDE | EMSYDNNPFI | ||||
| KTLYDGCASR | KGYEKTVIEI | NTPKIDQVPI | VDVMINDFGD | QNQKFGFEVG | ||||
| PVCFLG |
Funkcija
urediGen COL11A1 kodira jedan od dva kolagenska alfa lanca tipa XI, manji vlaknasti kolagen. Kolagen tipa XI je heterotrimer, ali treći alfa lanac je posttranslacijski modifikovani alfa 1 lanac tipa II. Za ovaj gen su identificirane tri varijante transkripta koje kodiraju različite izoforme.[6]
Klinički značaj
urediMutacije u ovom genu povezane su sa tipom II Sticklerog sindroma i Marshallovim sindromom.[6]
Sticklerov sindrom, tip II je autosomno dominantno stanje uzrokovano mutacijom gena COL11A1. Karakteristike Sticklerovog sindroma tipa II uključuju: senzornervni gubitak sluha, posebne crte lica (ravni profil lica, anvertirane nozdrve, mikrognatija), rascjep nepca, smetnje vida (anomalija staklastog tijela tipa 2, miopija s početkom u djetinjstvu, glaukom, katarakti i ablacija mrežnjačine fisije), displazija i artropatija.
Reference
uredi- ^ a b c GRCh38: Ensembl release 89: ENSG00000060718 - Ensembl, maj 2017
- ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000027966 - Ensembl, maj 2017
- ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ Bernard M, Yoshioka H, Rodriguez E, Van der Rest M, Kimura T, Ninomiya Y, Olsen BR, Ramirez F (Dec 1988). "Cloning and sequencing of pro-alpha 1 (XI) collagen cDNA demonstrates that type XI belongs to the fibrillar class of collagens and reveals that the expression of the gene is not restricted to cartilagenous tissue". J Biol Chem. 263 (32): 17159–66. doi:10.1016/S0021-9258(18)37512-4. PMID 3182841.
- ^ a b c "Entrez Gene: COL11A1 collagen, type XI, alpha 1".
- ^ "UniProt, P12107" (jezik: engleski). Pristupljeno 23. 11. 2021.
Dopunska literatura
uredi- Yoshioka H, Ramirez F (1990). "Pro-alpha 1(XI) collagen. Structure of the amino-terminal propeptide and expression of the gene in tumor cell lines". J. Biol. Chem. 265 (11): 6423–6. doi:10.1016/S0021-9258(19)39343-3. PMID 1690726.
- Hanson IM, Gorman P, Lui VC, et al. (1990). "The human alpha 2(XI) collagen gene (COL11A2) maps to the centromeric border of the major histocompatibility complex on chromosome 6". Genomics. 5 (4): 925–31. doi:10.1016/0888-7543(89)90135-3. PMID 2591970.
- Henry I, Bernheim A, Bernard M, et al. (1989). "Mapping of a human fibrillar collagen gene, pro alpha 1 (XI) (COL11A1), to the p21 region of chromosome 1". Genomics. 3 (1): 87–90. doi:10.1016/0888-7543(88)90165-6. PMID 3220479.
- Keene DR, Oxford JT, Morris NP (1995). "Ultrastructural localization of collagen types II, IX, and XI in the growth plate of human rib and fetal bovine epiphyseal cartilage: type XI collagen is restricted to thin fibrils". J. Histochem. Cytochem. 43 (10): 967–79. doi:10.1177/43.10.7560887. PMID 7560887.
- Zhidkova NI, Justice SK, Mayne R (1995). "Alternative mRNA processing occurs in the variable region of the pro-alpha 1(XI) and pro-alpha 2(XI) collagen chains". J. Biol. Chem. 270 (16): 9486–93. doi:10.1074/jbc.270.16.9486. PMID 7721876.
- Yoshioka H, Greenwel P, Inoguchi K, et al. (1995). "Structural and functional analysis of the promoter of the human alpha 1(XI) collagen gene". J. Biol. Chem. 270 (1): 418–24. doi:10.1074/jbc.270.1.418. PMID 7814404.
- Dharmavaram RM, Baldwin CT, Reginato AM, Jimenez SA (1993). "Amplification of cDNAs for human cartilage-specific types II, IX and XI collagens from chondrocytes and Epstein-Barr virus-transformed lymphocytes". Matrix. 13 (2): 125–33. doi:10.1016/s0934-8832(11)80071-5. PMID 8388073.
- Richards AJ, Yates JR, Williams R, et al. (1997). "A family with Stickler syndrome type 2 has a mutation in the COL11A1 gene resulting in the substitution of glycine 97 by valine in alpha 1 (XI) collagen". Hum. Mol. Genet. 5 (9): 1339–43. doi:10.1093/hmg/5.9.1339. PMID 8872475.
- Shrivastava A, Radziejewski C, Campbell E, et al. (1998). "An orphan receptor tyrosine kinase family whose members serve as nonintegrin collagen receptors". Mol. Cell. 1 (1): 25–34. doi:10.1016/S1097-2765(00)80004-0. PMID 9659900.
- Annunen S, Körkkö J, Czarny M, et al. (2000). "Splicing mutations of 54-bp exons in the COL11A1 gene cause Marshall syndrome, but other mutations cause overlapping Marshall/Stickler phenotypes". Am. J. Hum. Genet. 65 (4): 974–83. doi:10.1086/302585. PMC 1288268. PMID 10486316.
- Fischer H, Salahshor S, Stenling R, et al. (2002). "COL11A1 in FAP polyps and in sporadic colorectal tumors". BMC Cancer. 1: 17. doi:10.1186/1471-2407-1-17. PMC 59693. PMID 11707154.
- Jun AS, Liu SH, Koo EH, et al. (2001). "Microarray analysis of gene expression in human donor corneas". Arch. Ophthalmol. 119 (11): 1629–34. doi:10.1001/archopht.119.11.1629. PMID 11709013.
- Urabe K, Jingushi S, Ikenoue T, et al. (2002). "Immature osteoblastic cells express the pro-alpha2(XI) collagen gene during bone formation in vitro and in vivo". J. Orthop. Res. 19 (6): 1013–20. doi:10.1016/S0736-0266(01)00043-2. PMID 11780999.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
- Melkoniemi M, Koillinen H, Männikkö M, et al. (2003). "Collagen XI sequence variations in nonsyndromic cleft palate, Robin sequence and micrognathia". Eur. J. Hum. Genet. 11 (3): 265–70. doi:10.1038/sj.ejhg.5200950. PMID 12673280.
- Matsuo N, Yu-Hua W, Sumiyoshi H, et al. (2003). "The transcription factor CCAAT-binding factor CBF/NF-Y regulates the proximal promoter activity in the human alpha 1(XI) collagen gene (COL11A1)". J. Biol. Chem. 278 (35): 32763–70. doi:10.1074/jbc.M305599200. PMID 12805369.
- Poulson AV, Hooymans JM, Richards AJ, et al. (2004). "Clinical features of type 2 Stickler syndrome". J. Med. Genet. 41 (8): e107. doi:10.1136/jmg.2004.018382. PMC 1735871. PMID 15286167.
- Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC 1356129. PMID 16344560.
- Majava M, Hoornaert KP, Bartholdi D, et al. (2007). "A report on 10 new patients with heterozygous mutations in the COL11A1 gene and a review of genotype-phenotype correlations in type XI collagenopathies". Am. J. Med. Genet. A. 143 (3): 258–64. doi:10.1002/ajmg.a.31586. PMID 17236192. S2CID 43244117.