USH2A
Usherin ili ušerin jest protein koji je kod ljudi kodiran genom USH2A sa hromosoma 1.[5][6]
Aminokiselinska sekvenca
urediDužina polipeptidnog lanca je 5 202 aminokiseline, a molekulska težina 575.600 Da.[7]
| 10 | 20 | 30 | 40 | 50 | ||||
|---|---|---|---|---|---|---|---|---|
| MNCPVLSLGS | GFLFQVIEML | IFAYFASISL | TESRGLFPRL | ENVGAFKKVS | ||||
| IVPTQAVCGL | PDRSTFCHSS | AAAESIQFCT | QRFCIQDCPY | RSSHPTYTAL | ||||
| FSAGLSSCIT | PDKNDLHPNA | HSNSASFIFG | NHKSCFSSPP | SPKLMASFTL | ||||
| AVWLKPEQQG | VMCVIEKTVD | GQIVFKLTIS | EKETMFYYRT | VNGLQPPIKV | ||||
| MTLGRILVKK | WIHLSVQVHQ | TKISFFINGV | EKDHTPFNAR | TLSGSITDFA | ||||
| SGTVQIGQSL | NGLEQFVGRM | QDFRLYQVAL | TNREILEVFS | GDLLRLHAQS | ||||
| HCRCPGSHPR | VHPLAQRYCI | PNDAGDTADN | RVSRLNPEAH | PLSFVNDNDV | ||||
| GTSWVSNVFT | NITQLNQGVT | ISVDLENGQY | QVFYIIIQFF | SPQPTEIRIQ | ||||
| RKKENSLDWE | DWQYFARNCG | AFGMKNNGDL | EKPDSVNCLQ | LSNFTPYSRG | ||||
| NVTFSILTPG | PNYRPGYNNF | YNTPSLQEFV | KATQIRFHFH | GQYYTTETAV | ||||
| NLRHRYYAVD | EITISGRCQC | HGHADNCDTT | SQPYRCLCSQ | ESFTEGLHCD | ||||
| RCLPLYNDKP | FRQGDQVYAF | NCKPCQCNSH | SKSCHYNISV | DPFPFEHFRG | ||||
| GGGVCDDCEH | NTTGRNCELC | KDYFFRQVGA | DPSAIDVCKP | CDCDTVGTRN | ||||
| GSILCDQIGG | QCNCKRHVSG | RQCNQCQNGF | YNLQELDPDG | CSPCNCNTSG | ||||
| TVDGDITCHQ | NSGQCKCKAN | VIGLRCDHCN | FGFKFLRSFN | DVGCEPCQCN | ||||
| LHGSVNKFCN | PHSGQCECKK | EAKGLQCDTC | RENFYGLDVT | NCKACDCDTA | ||||
| GSLPGTVCNA | KTGQCICKPN | VEGRQCNKCL | EGNFYLRQNN | SFLCLPCNCD | ||||
| KTGTINGSLL | CNKSTGQCPC | KLGVTGLRCN | QCEPHRYNLT | IDNFQHCQMC | ||||
| ECDSLGTLPG | TICDPISGQC | LCVPNRQGRR | CNQCQPGFYI | SPGNATGCLP | ||||
| CSCHTTGAVN | HICNSLTGQC | VCQDASIAGQ | RCDQCKDHYF | GFDPQTGRCQ | ||||
| PCNCHLSGAL | NETCHLVTGQ | CFCKQFVTGS | KCDACVPSAS | HLDVNNLLGC | ||||
| SKTPFQQPPP | RGQVQSSSAI | NLSWSPPDSP | NAHWLTYSLL | RDGFEIYTTE | ||||
| DQYPYSIQYF | LDTDLLPYTK | YSYYIETTNV | HGSTRSVAVT | YKTKPGVPEG | ||||
| NLTLSYIIPI | GSDSVTLTWT | TLSNQSGPIE | KYILSCAPLA | GGQPCVSYEG | ||||
| HETSATIWNL | VPFAKYDFSV | QACTSGGCLH | SLPITVTTAQ | APPQRLSPPK | ||||
| MQKISSTELH | VEWSPPAELN | GIIIRYELYM | RRLRSTKETT | SEESRVFQSS | ||||
| GWLSPHSFVE | SANENALKPP | QTMTTITGLE | PYTKYEFRVL | AVNMAGSVSS | ||||
| AWVSERTGES | APVFMIPPSV | FPLSSYSLNI | SWEKPADNVT | RGKVVGYDIN | ||||
| MLSEQSPQQS | IPMAFSQLLH | TAKSQELSYT | VEGLKPYRIY | EFTITLCNSV | ||||
| GCVTSASGAG | QTLAAAPAQL | RPPLVKGINS | TTIHLRWFPP | EELNGPSPIY | ||||
| QLERRESSLP | ALMTTMMKGI | RFIGNGYCKF | PSSTHPVNTD | FTGIKASFRT | ||||
| KVPEGLIVFA | ASPGNQEEYF | ALQLKKGRLY | FLFDPQGSPV | EVTTTNDHGK | ||||
| QYSDGKWHEI | IAIRHQAFGQ | ITLDGIYTGS | SAILNGSTVI | GDNTGVFLGG | ||||
| LPRSYTILRK | DPEIIQKGFV | GCLKDVHFMK | NYNPSAIWEP | LDWQSSEEQI | ||||
| NVYNSWEGCP | ASLNEGAQFL | GAGFLELHPY | MFHGGMNFEI | SFKFRTDQLN | ||||
| GLLLFVYNKD | GPDFLAMELK | SGILTFRLNT | SLAFTQVDLL | LGLSYCNGKW | ||||
| NKVIIKKEGS | FISASVNGLM | KHASESGDQP | LVVNSPVYVG | GIPQELLNSY | ||||
| QHLCLEQGFG | GCMKDVKFTR | GAVVNLASVS | SGAVRVNLDG | CLSTDSAVNC | ||||
| RGNDSILVYQ | GKEQSVYEGG | LQPFTEYLYR | VIASHEGGSV | YSDWSRGRTT | ||||
| GAAPQSVPTP | SRVRSLNGYS | IEVTWDEPVV | RGVIEKYILK | AYSEDSTRPP | ||||
| RMPSASAEFV | NTSNLTGILT | GLLPFKNYAV | TLTACTLAGC | TESSHALNIS | ||||
| TPQEAPQEVQ | PPVAKSLPSS | LLLSWNPPKK | ANGIITQYCL | YMDGRLIYSG | ||||
| SEENYIVTDL | AVFTPHQFLL | SACTHVGCTN | SSWVLLYTAQ | LPPEHVDSPV | ||||
| LTVLDSRTIH | IQWKQPRKIS | GILERYVLYM | SNHTHDFTIW | SVIYNSTELF | ||||
| QDHMLQYVLP | GNKYLIKLGA | CTGGGCTVSE | ASEALTDEDI | PEGVPAPKAH | ||||
| SYSPDSFNVS | WTEPEYPNGV | ITSYGLYLDG | ILIHNSSELS | YRAYGFAPWS | ||||
| LHSFRVQACT | AKGCALGPLV | ENRTLEAPPE | GTVNVFVKTQ | GSRKAHVRWE | ||||
| APFRPNGLLT | HSVLFTGIFY | VDPVGNNYTL | LNVTKVMYSG | EETNLWVLID | ||||
| GLVPFTNYTV | QVNISNSQGS | LITDPITIAM | PPGAPDGVLP | PRLSSATPTS | ||||
| LQVVWSTPAR | NNAPGSPRYQ | LQMRSGDSTH | GFLELFSNPS | ASLSYEVSDL | ||||
| QPYTEYMFRL | VASNGFGSAH | SSWIPFMTAE | DKPGPVVPPI | LLDVKSRMML | ||||
| VTWQHPRKSN | GVITHYNIYL | HGRLYLRTPG | NVTNCTVMHL | HPYTAYKFQV | ||||
| EACTSKGCSL | SPESQTVWTL | PGAPEGIPSP | ELFSDTPTSV | IISWQPPTHP | ||||
| NGLVENFTIE | RRVKGKEEVT | TLVTLPRSHS | MRFIDKTSAL | SPWTKYEYRV | ||||
| LMSTLHGGTN | SSAWVEVTTR | PSRPAGVQPP | VVTVLEPDAV | QVTWKPPLIQ | ||||
| NGDILSYEIH | MPDPHITLTN | VTSAVLSQKV | THLIPFTNYS | VTIVACSGGN | ||||
| GYLGGCTESL | PTYVTTHPTV | PQNVGPLSVI | PLSESYVVIS | WQPPSKPNGP | ||||
| NLRYELLRRK | IQQPLASNPP | EDLNRWHNIY | SGTQWLYEDK | GLSRFTTYEY | ||||
| MLFVHNSVGF | TPSREVTVTT | LAGLPERGAN | LTASVLNHTA | IDVRWAKPTV | ||||
| QDLQGEVEYY | TLFWSSATSN | DSLKILPDVN | SHVIGHLKPN | TEYWIFISVF | ||||
| NGVHSINSAG | LHATTCDGEP | QGMLPPEVVI | INSTAVRVIW | TSPSNPNGVV | ||||
| TEYSIYVNNK | LYKTGMNVPG | SFILRDLSPF | TIYDIQVEVC | TIYACVKSNG | ||||
| TQITTVEDTP | SDIPTPTIRG | ITSRSLQIDW | VSPRKPNGII | LGYDLLWKTW | ||||
| YPCAKTQKLV | QDQSDELCKA | VRCQKPESIC | GHICYSSEAK | VCCNGVLYNP | ||||
| KPGHRCCEEK | YIPFVLNSTG | VCCGGRIQEA | QPNHQCCSGY | YARILPGEVC | ||||
| CPDEQHNRVS | VGIGDSCCGR | MPYSTSGNQI | CCAGRLHDGH | GQKCCGRQIV | ||||
| SNDLECCGGE | EGVVYNRLPG | MFCCGQDYVN | MSDTICCSAS | SGESKAHIKK | ||||
| NDPVPVKCCE | TELIPKSQKC | CNGVGYNPLK | YVCSDKISTG | MMMKETKECR | ||||
| ILCPASMEAT | EHCGRCDFNF | TSHICTVIRG | SHNSTGKASI | EEMCSSAEET | ||||
| IHTGSVNTYS | YTDVNLKPYM | TYEYRISAWN | SYGRGLSKAV | RARTKEDVPQ | ||||
| GVSPPTWTKI | DNLEDTIVLN | WRKPIQSNGP | IIYYILLRNG | IERFRGTSLS | ||||
| FSDKEGIQPF | QEYSYQLKAC | TVAGCATSSK | VVAATTQGVP | ESILPPSITA | ||||
| LSAVALHLSW | SVPEKSNGVI | KEYQIRQVGK | GLIHTDTTDR | RQHTVTGLQP | ||||
| YTNYSFTLTA | CTSAGCTSSE | PFLGQTLQAA | PEGVWVTPRH | IIINSTTVEL | ||||
| YWSLPEKPNG | LVSQYQLSRN | GNLLFLGGSE | EQNFTDKNLE | PNSRYTYKLE | ||||
| VKTGGGSSAS | DDYIVQTPMS | TPEEIYPPYN | ITVIGPYSIF | VAWIPPGILI | ||||
| PEIPVEYNVL | LNDGSVTPLA | FSVGHHQSTL | LENLTPFTQY | EIRIQACQNG | ||||
| SCGVSSRMFV | KTPEAAPMDL | NSPVLKALGS | ACIEIKWMPP | EKPNGIIINY | ||||
| FIYRRPAGIE | EESVLFVWSE | GALEFMDEGD | TLRPFTLYEY | RVRACNSKGS | ||||
| VESLWSLTQT | LEAPPQDFPA | PWAQATSAHS | VLLNWTKPES | PNGIISHYRV | ||||
| VYQERPDDPT | FNSPTVHAFT | VKGTSHQAHL | YGLEPFTTYR | IGVVAANHAG | ||||
| EILSPWTLIQ | TLESSPSGLR | NFIVEQKENG | RALLLQWSEP | MRTNGVIKTY | ||||
| NIFSDGFLEY | SGLNRQFLFR | RLDPFTLYTL | TLEACTRAGC | AHSAPQPLWT | ||||
| DEAPPDSQLA | PTVHSVKSTS | VELSWSEPVN | PNGKIIRYEV | IRRCFEGKAW | ||||
| GNQTIQADEK | IVFTEYNTER | NTFMYNDTGL | QPWTQCEYKI | YTWNSAGHTC | ||||
| SSWNVVRTLQ | APPEGLSPPV | ISYVSMNPQK | LLISWIPPEQ | SNGIIQSYRL | ||||
| QRNEMLYPFS | FDPVTFNYTD | EELLPFSTYS | YALQACTSGG | CSTSKPTSIT | ||||
| TLEAAPSEVS | PPDLWAVSAT | QMNVCWSPPT | VQNGKITKYL | VRYDNKESLA | ||||
| GQGLCLLVSH | LQPYSQYNFS | LVACTNGGCT | ASVSKSAWTM | EALPENMDSP | ||||
| TLQVTGSESI | EITWKPPRNP | NGQIRSYELR | RDGTIVYTGL | ETRYRDFTLT | ||||
| PGVEYSYTVT | ASNSQGGILS | PLVKDRTSPS | APSGMEPPKL | QARGPQEILV | ||||
| NWDPPVRTNG | DIINYTLFIR | ELFERETKII | HINTTHNSFG | MQSYIVNQLK | ||||
| PFHRYEIRIQ | ACTTLGCASS | DWTFIQTPEI | APLMQPPPHL | EVQMAPGGFQ | ||||
| PTVSLLWTGP | LQPNGKVLYY | ELYRRQIATQ | PRKSNPVLIY | NGSSTSFIDS | ||||
| ELLPFTEYEY | QVWAVNSAGK | APSSWTWCRT | GPAPPEGLRA | PTFHVISSTQ | ||||
| AVVNISAPGK | PNGIVSLYRL | FSSSAHGAET | VLSEGMATQQ | TLHGLQAFTN | ||||
| YSIGVEACTC | FNCCSKGPTA | ELRTHPAPPS | GLSSPQIGTL | ASRTASFRWS | ||||
| PPMFPNGVIH | SYELQFHVAC | PPDSALPCTP | SQIETKYTGL | GQKASLGGLQ | ||||
| PYTTYKLRVV | AHNEVGSTAS | EWISFTTQKE | LPQYRAPFSV | DSNLSVVCVN | ||||
| WSDTFLLNGQ | LKEYVLTDGG | RRVYSGLDTT | LYIPRTADKT | FFFQVICTTD | ||||
| EGSVKTPLIQ | YDTSTGLGLV | LTTPGKKKGS | RSKSTEFYSE | LWFIVLMAML | ||||
| GLILLAIFLS | LILQRKIHKE | PYIRERPPLV | PLQKRMSPLN | VYPPGENHMG | ||||
| LADTKIPRSG | TPVSIRSNRS | ACVLRIPSQN | QTSLTYSQGS | LHRSVSQLMD | ||||
| IQDKKVLMDN | SLWEAIMGHN | SGLYVDEEDL | MNAIKDFSSV | TKERTTFTDT | ||||
| HL |
Funkcija
urediOvaj gen kodira protein usherin koji sadrži lamininske EGF-motive, pentraksinskogh domena i mnoge fibronektinske tip III motive. Kodirani protein povezan sa baznom membranom može biti važan u razvoju i homeostazi unutrašnjeg uha i retine. Mutacije unutar ovog gena su povezane sa Usherovim sindromom tipa IIa. Opisane su alternativno prerađene varijante transkripta koje kodiraju različite izoforme.[8]
Reference
uredi- ^ a b c GRCh38: Ensembl release 89: ENSG00000042781 - Ensembl, maj 2017
- ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000026609 - Ensembl, maj 2017
- ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ Eudy JD, Weston MD, Yao S, Hoover DM, Rehm HL, Ma-Edmonds M, Yan D, Ahmad I, Cheng JJ, Ayuso C, Cremers C, Davenport S, Moller C, Talmadge CB, Beisel KW, Tamayo M, Morton CC, Swaroop A, Kimberling WJ, Sumegi J (Jul 1998). "Mutation of a gene encoding a protein with extracellular matrix motifs in Usher syndrome type IIa". Science. 280 (5370): 1753–7. Bibcode:1998Sci...280.1753E. doi:10.1126/science.280.5370.1753. PMID 9624053.
- ^ Weston MD, Eudy JD, Fujita S, Yao S, Usami S, Cremers C, Greenberg J, Ramesar R, Martini A, Moller C, Smith RJ, Sumegi J, Kimberling WJ (maj 2000). "Genomic structure and identification of novel mutations in usherin, the gene responsible for Usher syndrome type IIa". Am J Hum Genet. 66 (4): 1199–210. doi:10.1086/302855. PMC 1288187. PMID 10729113.
- ^ "UniProt, O75445" (jezik: en.). Pristupljeno 10. 12. 2021.CS1 održavanje: nepoznati jezik (link)
- ^ "Entrez Gene: USH2A Usher syndrome 2A (autosomal recessive, mild)".
Dopunska literatura
uredi- Michalski N, Michel V, Bahloul A, Lefèvre G, Barral J, Yagi H, Chardenoux S, Weil D, Martin P, Hardelin JP, Sato M, Petit C (2007). "Molecular characterization of the ankle-link complex in cochlear hair cells and its role in the hair bundle functioning". J. Neurosci. 27 (24): 6478–88. doi:10.1523/JNEUROSCI.0342-07.2007. PMC 6672440. PMID 17567809.
- Liu X, Bulgakov OV, Darrow KN, Pawlyk B, Adamian M, Liberman MC, Li T (2007). "Usherin is required for maintenance of retinal photoreceptors and normal development of cochlear hair cells". Proc Natl Acad Sci U S A. 104 (11): 4413–8. Bibcode:2007PNAS..104.4413L. doi:10.1073/pnas.0610950104. PMC 1838616. PMID 17360538.
- Ahmed ZM, Riazuddin S, Riazuddin S, Wilcox ER (2004). "The molecular genetics of Usher syndrome". Clin. Genet. 63 (6): 431–44. doi:10.1034/j.1399-0004.2003.00109.x. PMID 12786748. S2CID 21024265.
- Roland FP (1978). "Management of atypical pneumonias in view of the new entity "Legionnaire's disease"". Rhode Island Medical Journal. 61 (7): 270–2. PMID 276901.
- Liu XZ, Hope C, Liang CY, et al. (2000). "A mutation (2314delG) in the Usher syndrome type IIA gene: high prevalence and phenotypic variation". Am. J. Hum. Genet. 64 (4): 1221–5. doi:10.1086/302332. PMC 1377848. PMID 10090909.
- Adato A, Weston MD, Berry A, et al. (2000). "Three novel mutations and twelve polymorphisms identified in the USH2A gene in Israeli USH2 families". Hum. Mutat. 15 (4): 388. doi:10.1002/(SICI)1098-1004(200004)15:4<388::AID-HUMU27>3.0.CO;2-N. PMID 10738000.
- Rivolta C, Sweklo EA, Berson EL, Dryja TP (2001). "Missense mutation in the USH2A gene: association with recessive retinitis pigmentosa without hearing loss". Am. J. Hum. Genet. 66 (6): 1975–8. doi:10.1086/302926. PMC 1378039. PMID 10775529.
- Dreyer B, Tranebjaerg L, Rosenberg T, et al. (2000). "Identification of novel USH2A mutations: implications for the structure of USH2A protein". Eur. J. Hum. Genet. 8 (7): 500–6. doi:10.1038/sj.ejhg.5200491. PMID 10909849.
- Leroy BP, Aragon-Martin JA, Weston MD, et al. (2001). "Spectrum of mutations in USH2A in British patients with Usher syndrome type II". Exp. Eye Res. 72 (5): 503–9. doi:10.1006/exer.2000.0978. PMID 11311042.
- Dreyer B, Tranebjaerg L, Brox V, et al. (2001). "A common ancestral origin of the frequent and widespread 2299delG USH2A mutation". Am. J. Hum. Genet. 69 (1): 228–34. doi:10.1086/321269. PMC 1226039. PMID 11402400.
- Bhattacharya G, Miller C, Kimberling WJ, et al. (2002). "Localization and expression of usherin: a novel basement membrane protein defective in people with Usher's syndrome type IIa". Hear. Res. 163 (1–2): 1–11. doi:10.1016/S0378-5955(01)00344-6. PMID 11788194. S2CID 25738905.
- Nájera C, Beneyto M, Blanca J, et al. (2002). "Mutations in myosin VIIA (MYO7A) and usherin (USH2A) in Spanish patients with Usher syndrome types I and II, respectively". Hum. Mutat. 20 (1): 76–7. doi:10.1002/humu.9042. PMID 12112664.
- Huang D, Eudy JD, Uzvolgyi E, et al. (2003). "Identification of the mouse and rat orthologs of the gene mutated in Usher syndrome type IIA and the cellular source of USH2A mRNA in retina, a target tissue of the disease". Genomics. 80 (2): 195–203. doi:10.1006/geno.2002.6823. PMID 12160733.
- Rivolta C, Berson EL, Dryja TP (2002). "Paternal uniparental heterodisomy with partial isodisomy of chromosome 1 in a patient with retinitis pigmentosa without hearing loss and a missense mutation in the Usher syndrome type II gene USH2A". Arch. Ophthalmol. 120 (11): 1566–71. doi:10.1001/archopht.120.11.1566. PMID 12427073.
- Pearsall N, Bhattacharya G, Wisecarver J, et al. (2003). "Usherin expression is highly conserved in mouse and human tissues". Hear. Res. 174 (1–2): 55–63. doi:10.1016/S0378-5955(02)00635-4. PMID 12433396. S2CID 31139976.
- Bernal S, Ayuso C, Antiñolo G, et al. (2003). "Mutations in USH2A in Spanish patients with autosomal recessive retinitis pigmentosa: high prevalence and phenotypic variation". J. Med. Genet. 40 (1): 8e–8. doi:10.1136/jmg.40.1.e8. PMC 1735247. PMID 12525556.
- Bhattacharya G, Kalluri R, Orten DJ, et al. (2004). "A domain-specific usherin/collagen IV interaction may be required for stable integration into the basement membrane superstructure". J. Cell Sci. 117 (Pt 2): 233–42. doi:10.1242/jcs.00850. PMID 14676276.
- Aller E, Nájera C, Millán JM, et al. (2004). "Genetic analysis of 2299delG and C759F mutations (USH2A) in patients with visual and/or auditory impairments". Eur. J. Hum. Genet. 12 (5): 407–10. doi:10.1038/sj.ejhg.5201138. PMID 14970843.
- van Wijk E, Pennings RJ, te Brinke H, et al. (2004). "Identification of 51 novel exons of the Usher syndrome type 2A (USH2A) gene that encode multiple conserved functional domains and that are mutated in patients with Usher syndrome type II". Am. J. Hum. Genet. 74 (4): 738–44. doi:10.1086/383096. PMC 1181950. PMID 15015129.