POM121

POM121
Identifikatori
Aliasi	POM121
Vanjski ID-jevi	OMIM: 615753 MGI: 2137624 HomoloGene: 70878 GeneCards: POM121
Lokacija gena (čovjek)
Hrom.	Hromosom 7 (čovjek)
Kraj	72,951,440 bp
Lokacija gena (miš)
Hrom.	Hromosom 5 (miš)
Kraj	135,423,400 bp
Obrazac RNK ekspresije
	; ;
	Više referentnih podataka o ekspresiji
Ontologija gena
Molekularna funkcija	• GO:0001948, GO:0016582 vezivanje za proteine; • GO:0005487 structural constituent of nuclear pore; • nuclear localization sequence binding;
Ćelijska komponenta	• integral component of membrane; • nuclear envelope; • endoplasmic reticulum membrane; • membrana; • Endoplazmatski retikulum; • jedro; • nuclear pore central transport channel; • nuclear pore nuclear basket; • nukleoplazma; • Jedarna membrana; • jedrova pora; • host cell;
Biološki proces	• mRNA transport; • protein transport; • GO:0022415 viral process; • mRNA export from nucleus; • RNA export from nucleus; • protein import into nucleus; • regulation of glycolytic process; • tRNA export from nucleus; • protein sumoylation; • viral transcription; • GO:1905616 regulation of gene silencing by miRNA; • GO:0046795 intracellular transport of virus; • regulation of cellular response to heat;
	Izvori:Amigo / QuickGO
Ortolozi
	9883
	107939
	ENSG00000196313
	ENSMUSG00000053293
	Q96HA1
	Q8K3Z9
	NM_001257190; NM_172020; NM_001367610
	NM_148932
	NP_001244119; NP_742017; NP_001354539
	NP_683734
	Wikipodaci
Pogledaj/uredi – čovjek	Pogledaj/uredi – miš

Membranski protein POM pora jedrove ovojnice 121 je protein koji je kod ljudi kodiran genom POM121.^[5]^[6]^[7] Opisane su alternativno prerađene varijante transkripta koje kodiraju različite izoforme proteina, ali je utvrđena priroda cijele dužine samo jedne.^[8]

Aminokiselinska sekvenca

Dužina polipeptidnog lanca je 1.249 aminokiselina, а molekulska težina 127.720 Da.^[9]

C: Cistein

D: Asparaginska kiselina

E: Glutaminska kiselina

F: Fenilalanin

G: Glicin

H: Histidin

I: Izoleucin

K: Lizin

L: Leucin

M: Metionin

N: Asparagin

P: Prolin

Q: Glutamin

R: Arginin

S: Serin

T: Treonin

V: Valin

W: Triptofan

Y: Tirozin

10	20	30	40	50
MSPAAAAAGA	GERRRPIASV	RDGRGRGCGG	PARAVLLGLS	LVGLLLYLVP
AAAALAWLTV	GATAAWWGLS	REPRGSRPLS	SFVRKARHRR	PLSSFVRKAR
HRRTLFASPL	AKSTANGNLL	EPRTLLEGPD	PAELLLMGSY	LGKPGPPQPA
AAPEGQDLRD	RPGRRPPARP	APRSPPPRSP	PPRSPPPSPP	THRAHHVYPS
LPTPLLRPSR	RPSPRDCGTL	PNRFVITPRR	RYPIHQAQYS	CLGVLPTVCW
NGYHKKAVLS	PRNSRMVCSP	VTVRIAPPDR	RFSRSAIPEQ	IISSTLSSPS
SNAPDPCAKE	TVLSALKEKE	KKRTVEEEDQ	IFLDGQENKR	RRHDSSGSGH
SAFEPLVANG	VPASFVPKPG	SLKRGLNSQS	SDDHLNKRSR	SSSMSSLTGA
YASGIPSSSR	NAITSSYSST	RGISQLWKRN	GPSSSPFSSP	ASSRSQTPER
PAKKIREEEL	CHHSSSSTPL	AADRESQGEK	AADTTPRKKQ	NSNSQSTPGS
SGQRKRKVQL	LPSRRGEQLT	LPPPPQLGYS	ITAEDLDLEK	KASLQWFNQA
LEDKSDAASN	SVTETPPITQ	PSFTFTLPAA	APASPPTSLL	APSTNPLLES
LKKMQTPPSL	PPCPESAGAA	TTEALSPPKT	PSLLPPLGLS	QSGPPGLLPS
PSFDSKPPTT	LLGLIPAPSM	VPATDTKAPP	TLQAETATKP	QATSAPSPAP
KQSFLFGTQN	TSPSSPAAPA	ASSAPPMFKP	IFTAPPKSEK	EGPTPPGPSV
TATAPSSSSL	PTTTSTTAPT	FQPVFSSMGP	PASVPLPAPF	FKQTTTPATA
PTTTAPLFTG	LASATSAVAP	ITSASPSTDS	ASKPAFGFGI	NSVSSSSVST
TTSTATAASQ	PFLFGAPQAS	AASFTPAMGS	IFQFGKPPAL	PTTTTVTTFS
QSLHTAVPTA	TSSSAADFSG	FGSTLATSAP	ATSSQPTLTF	SNTSTPTFNI
PFGSSAKSPL	PSYPGANPQP	AFGAAEGQPP	GAAKPALAPS	FGSSFTFGNS
AAPAAAPTPA	PPSMIKVVPA	YVPTPIHPIF	GGATHSAFGL	KATASAFGAP
ASSQPAFGGS	TAVFFGAATS	SGFGATTQTA	SSGSSSSVFG	STTPSPFTFG
GSAAPAGSGS	FGINVATPGS	STTTGAFSFG	AGQSGSTATS	TPFAGGLGQN
ALGTTGQSTP	FAFNVSSTTE	SKPVFGGTAT	PTFGLNTPAP	GVGTSGSSLS
FGASSAPAQG	FVGVAPFGSA	ALSFSIGAGS	KTPGARQRLQ	ARRQHTRKK

Funkcija

Jedarna ovojnica stvara različite odjeljke u jedrovim i citoplazmatskim odjeljcim eukariotskih ćelija. Sastoje se od dvije koncentrične perforirane membrane jedrovih pora, velikih proteinskih kompleksa koji tvore vodene kanale za regulaciju protoka makromolekula između jedra i citoplazme. Ovi kompleksi sastoje se od najmanje po 100 različitih polipeptidnih podjedinica, od kojih mnoge pripadaju porodici nukleoporina. Ovaj gen kodira člana nukleoporina koji sadrži ponavljanje FG. Protein kodiran ovim genom je integralni membranski protein koji se nalazi u kompleksu prstenova sa središnjim krakovima i sudjeluje u sidrenju kompleksa jedarnih pora za jedrovuu ovojnicu.^[8]

Antitijela protiv ovog proteina mogu se koristiti za identifikaciju jedrove ovojnice u imunofluorescencijskim eksperimentima.^[10]

Reference

^ ^a ^b ^c GRCh38: Ensembl release 89: ENSG00000196313 - Ensembl, maj 2017
^ ^a ^b ^c GRCm38: Ensembl release 89: ENSMUSG00000053293 - Ensembl, maj 2017
^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ Hallberg E, Wozniak RW, Blobel G (Aug 1993). "An integral membrane protein of the pore membrane domain of the nuclear envelope contains a nucleoporin-like region". J Cell Biol. 122 (3): 513–21. doi:10.1083/jcb.122.3.513. PMC 2119659. PMID 8335683.
^ Ishikawa K, Nagase T, Suyama M, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (Dec 1998). "Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro". DNA Res. 5 (3): 169–76. doi:10.1093/dnares/5.3.169. PMID 9734811.
^ Funakoshi T, Maeshima K, Yahata K, Sugano S, Imamoto F, Imamoto N (Oct 2007). "Two distinct human POM121 genes: requirement for the formation of nuclear pore complexes". FEBS Lett. 581 (25): 4910–6. doi:10.1016/j.febslet.2007.09.021. PMID 17900573. S2CID 12819086.
^ ^a ^b "Entrez Gene: POM121 POM121 membrane glycoprotein (homo sapiens)".
^ "UniProt, Q96HA1" (jezik: engleski). Pristupljeno 28. 9. 2021.
^ Kihlmark M, Imreh G, Hallberg E (oktobar 2001). "Sequential degradation of proteins from the nuclear envelope during apoptosis". J. Cell Sci. 114 (Pt 20): 3643–53. doi:10.1242/jcs.114.20.3643. PMID 11707516.

Dopunska literatura

Bodoor K, Shaikh S, Enarson P, et al. (1999). "Function and assembly of nuclear pore complex proteins". Biochem. Cell Biol. 77 (4): 321–9. doi:10.1139/bcb-77-4-321. PMID 10546895.
Kipersztok S, Osawa GA, Liang LF, et al. (1995). "POM-ZP3, a bipartite transcript derived from human ZP3 and a POM121 homologue". Genomics. 25 (2): 354–9. doi:10.1016/0888-7543(95)80033-I. PMID 7789967.
Fouchier RA, Meyer BE, Simon JH, et al. (1998). "Interaction of the Human Immunodeficiency Virus Type 1 Vpr Protein with the Nuclear Pore Complex". J. Virol. 72 (7): 6004–13. doi:10.1128/JVI.72.7.6004-6013.1998. PMC 110405. PMID 9621063.
Daigle N, Beaudouin J, Hartnell L, et al. (2001). "Nuclear pore complexes form immobile networks and have a very low turnover in live mammalian cells". J. Cell Biol. 154 (1): 71–84. doi:10.1083/jcb.200101089. PMC 2196857. PMID 11448991.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Hillier LW, Fulton RS, Fulton LA, et al. (2003). "The DNA sequence of human chromosome 7". Nature. 424 (6945): 157–64. doi:10.1038/nature01782. PMID 12853948.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
Eriksson C, Rustum C, Hallberg E (2004). "Dynamic properties of nuclear pore complex proteins in gp210 deficient cells". FEBS Lett. 572 (1–3): 261–5. doi:10.1016/j.febslet.2004.07.044. PMID 15304359. S2CID 22760247.
Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
Lim J, Hao T, Shaw C, et al. (2006). "A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration". Cell. 125 (4): 801–14. doi:10.1016/j.cell.2006.03.032. PMID 16713569. S2CID 13709685.
Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983. S2CID 7827573.

[refGRCh38Ensembl-1] GRCh38: Ensembl release 89: ENSG00000196313 - Ensembl, maj 2017

[refGRCm38Ensembl-2] GRCm38: Ensembl release 89: ENSMUSG00000053293 - Ensembl, maj 2017

[3] "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[4] "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.

[pmid8335683-5] Hallberg E, Wozniak RW, Blobel G (Aug 1993). "An integral membrane protein of the pore membrane domain of the nuclear envelope contains a nucleoporin-like region". J Cell Biol. 122 (3): 513–21. doi:10.1083/jcb.122.3.513. PMC 2119659. PMID 8335683.

[pmid9734811-6] Ishikawa K, Nagase T, Suyama M, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (Dec 1998). "Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro". DNA Res. 5 (3): 169–76. doi:10.1093/dnares/5.3.169. PMID 9734811.

[pmid17900573-7] Funakoshi T, Maeshima K, Yahata K, Sugano S, Imamoto F, Imamoto N (Oct 2007). "Two distinct human POM121 genes: requirement for the formation of nuclear pore complexes". FEBS Lett. 581 (25): 4910–6. doi:10.1016/j.febslet.2007.09.021. PMID 17900573. S2CID 12819086.

[entrez-8] "Entrez Gene: POM121 POM121 membrane glycoprotein (homo sapiens)".

[UniProt-9] "UniProt, Q96HA1" (jezik: engleski). Pristupljeno 28. 9. 2021.

[pmid11707516-10] Kihlmark M, Imreh G, Hallberg E (oktobar 2001). "Sequential degradation of proteins from the nuclear envelope during apoptosis". J. Cell Sci. 114 (Pt 20): 3643–53. doi:10.1242/jcs.114.20.3643. PMID 11707516.

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