Šablon:Kvalifikacije za UEFA Ligu prvaka 2016/17 - 2. krug kvalifikacija

Prve utakmice odigrane su 12. i 13. jula a uzvratne 19. i 20. jula 2016.

Tim 1	Rez.	Tim 2	Prva utakmica	Druga utakmica
Qarabağ	3–1	F91 Dudelange	2–0	1–1
Hapoel Be'er Sheva	3–2	Sheriff Tiraspol	3–2	0–0
Olimpija Ljubljana	6–6 (a)	Trenčín	3–4	3–2
Red Bull Salzburg	3–0	Liepāja	1–0	2–0
Vardar	3–5	Dinamo Zagreb	1–2	2–3
The New Saints	0–3	APOEL	0–0	0–3
Zrinjski Mostar	1–3	Legia Varšava	1–1	0–2
Ludogorec Razgrad	5–0	Mladost Podgorica	2–0	3–0
Dinamo Tbilisi	3–1	Alaškert	2–0	1–1
Žalgiris Vilnius	1–2	Astana	0–0	1–2
Partizani Tirana	2–2 (3–1 p)	Ferencváros	1–1	1–1 (prod.)
BATE Borisov	4–2	SJK	2–0	2–2
Valletta	2–4	Crvena zvezda	1–2	1–2
Rosenborg	5–4	IFK Norrköping	3–1	2–3
Dundalk	3–3 (a)	FH	1–1	2–2
Lincoln Red Imps	1–3	Celtic	1–0	0–3
Crusaders	0–9	Copenhagen	0–3	0–6