Proteopedia

Proteopedia je wiki, 3D enciklopedija proteina i drugih molekula.^[1]^[2]^[3]^[4] Stranica sadrži stranicu za svaki unos u Protein Data Bank (>130.000 stranica), kao i stranice koje su više opisne strukture proteina općenito, kao što su acetilholinesteraza,^[5] hemoglobin,^[6] i fotosistem II ^[7] sa Jmol prikazom koji ističe funkcionalna mjesta i ligande . Koristi alat za autorstvo scena tako da korisnici ne moraju da uče JSmol skriptni jezik za kreiranje prilagođenih molekularnih scena. Prilagođene scene se lako pričvršćuju na "zelene veze" u opisnom tekstu koji prikazuje te scene u JSmolu. Web pretraživač je sve što je potrebno za pristup sajtu i 3D informacijama; nije potrebno instalirati preglednike.

Proteopedia je dobitnik nagrade za najbolju web stranicu časopisa The Scientist 2010. godine. ^[8]

Pravni aspekti

Uslovi licenciranja

Sav sadržaj koji dodaju korisnici je besplatan i pokriven je GNU licencom za slobodnu dokumentaciju . Proteopedia se nalazi u Izraelskom centru za strukturnu proteomiku ^[9] na Weizmann institutu za nauku.

Također pogledati

Struktura proteina

Reference

^ "Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules". Genome Biol. 9 (8): R121. 2008. doi:10.1186/gb-2008-9-8-r121. PMC 2575511. PMID 18673581.
^ Martz E (2009). "Proteopedia.Org: a scientific "Wiki" bridging the rift between 3D structure and function of biomacromolecules". Biopolymers. 92 (1): 76–7. doi:10.1002/bip.21126. PMID 19117028.
^ "Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function". Biochemistry and Molecular Biology Education. 38 (5): 341–2. 2010. doi:10.1002/bmb.20431. PMID 21567857.
^ Prilusky, J; Hodis, E.; Canner, D.; Decatur, W. A.; Oberholser, K.; Martz, E.; Berchanski, A.; Harel, M.; Sussman, J. L. (Aug 2011). "Proteopedia: A status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules". Journal of Structural Biology. 175 (2): 244–252. doi:10.1016/j.jsb.2011.04.011. PMID 21536137.
^ "Acetylcholinesterase". Proteopedia.
^ "Hemoglobin". Proteopedia.
^ "Photosystem II". Proteopedia.
^ Luiggi C (septembar 2010). "Web Gems Introducing the winners of the first annual Labbies, our prizes for the best web-based multimedia by labs: Website Winner:Proteopedia". The Scientist. 24 (9): 47. Arhivirano s originala, 12. 4. 2011. Pristupljeno 23. 12. 2021. Very absorbing. Kept me looking and playing (and learning) with it for a long time. Very informative and a good resource.
^ "The Israel Structural Proteomics Center".

[pmid18673581-1] "Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules". Genome Biol. 9 (8): R121. 2008. doi:10.1186/gb-2008-9-8-r121. PMC 2575511. PMID 18673581.

[pmid19117028-2] Martz E (2009). "Proteopedia.Org: a scientific "Wiki" bridging the rift between 3D structure and function of biomacromolecules". Biopolymers. 92 (1): 76–7. doi:10.1002/bip.21126. PMID 19117028.

[Hodis_2010-3] "Proteopedia: A collaborative, virtual 3D web-resource for protein and biomolecule structure and function". Biochemistry and Molecular Biology Education. 38 (5): 341–2. 2010. doi:10.1002/bmb.20431. PMID 21567857.

[pmid21536137-4] Prilusky, J; Hodis, E.; Canner, D.; Decatur, W. A.; Oberholser, K.; Martz, E.; Berchanski, A.; Harel, M.; Sussman, J. L. (Aug 2011). "Proteopedia: A status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules". Journal of Structural Biology. 175 (2): 244–252. doi:10.1016/j.jsb.2011.04.011. PMID 21536137.

[urlAcetylcholinesterase,_life_in_3D-5] "Acetylcholinesterase". Proteopedia.

[urlHemoglobin_-_Proteopedia,_life_in_3D-6] "Hemoglobin". Proteopedia.

[urlPhotosystem_II_-_Proteopedia,_life_in_3D-7] "Photosystem II". Proteopedia.

[The_Scientist_2010-8] Luiggi C (septembar 2010). "Web Gems Introducing the winners of the first annual Labbies, our prizes for the best web-based multimedia by labs: Website Winner:Proteopedia". The Scientist. 24 (9): 47. Arhivirano s originala, 12. 4. 2011. Pristupljeno 23. 12. 2021. Very absorbing. Kept me looking and playing (and learning) with it for a long time. Very informative and a good resource.

[urlISPC-9] "The Israel Structural Proteomics Center".

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